DeepGFT requires python version >= 3.7. We tested it in python 3.8.16 and cuda 11.6.1 on Linux. pip install torch==1.12.0+cu116 torchvision==0.13.0+cu116 torchaudio ...

Spatial transcriptomics measures gene expression while preserving tissue coordinates, and spatial domain identification—partitioning tissue into regions with coherent transcriptional programs—has ...

2.1 Single-nucleus transcriptomics identifies Pbx transcription factors in intermediate progenitor cell regulation To investigate transcriptional heterogeneity and regulatory programs in cortical ...

The transition of healthy arteries and cardiac valves into dense, cell-rich, calcified, and fibrotic tissues is driven by a complex interplay of both cellular and molecular mechanisms. Specific cell ...

This important study presents a theoretically grounded framework for dimensionality reduction in single-cell RNA sequencing data, utilizing the principles of Riemannian manifolds. The proposed method ...